PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00119g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 343aa    MW: 39164.9 Da    PI: 9.6741
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00119g00025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.31.6e-391062584131
                       TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.. 73 
                               kkdrhski T++g+RdRR+Rl++++a+ fF+Lqd+L fdk+skt+eWLl ++k ai e ++              s+ss sec  
  Peaxi162Scf00119g00025.1 106 KKDRHSKINTAQGPRDRRIRLPIDIARNFFKLQDMLEFDKASKTVEWLLIKSKSAIMEHVNMskqsgsnnvkdpnSASSVSECev 190
                               9***********************************************************9976666666655432222244433 PP

                       TCP  74 ....eaesssssasnsssg............kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                                    + s s+       +            +++k+++k+ ks ++aa + ++ kesr++ar++arert+ k++
  Peaxi162Scf00119g00025.1 191 vsgiAECSPSND------HqkknknakgiscNKEKKKKKKAKSVRRAAFHPAFTKESRKQAREKARERTELKKN 258
                               333322222222......1222344667889899999999999999999********************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.143106164IPR017887Transcription factor TCP subgroup
PfamPF036349.9E-44106257IPR005333Transcription factor, TCP
PROSITE profilePS513709.148239256IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MYPSISNNSN YSPICSSLFN IPSPSMQYEH DLFFEYYYHD HHVLQQPQAL ADDSTETDIN  60
NMAYSNKLDA LISGNELKEG GGCGNNKKGK RSNKNTSIPR NKRGYKKDRH SKINTAQGPR  120
DRRIRLPIDI ARNFFKLQDM LEFDKASKTV EWLLIKSKSA IMEHVNMSKQ SGSNNVKDPN  180
SASSVSECEV VSGIAECSPS NDHQKKNKNA KGISCNKEKK KKKKAKSVRR AAFHPAFTKE  240
SRKQAREKAR ERTELKKNFG EAMAHGIMNL RSWSEESGHN GMDHPSHEMR ADVEELTSHH  300
EEHLIGTKEN IVNDCNWSPY AIFNYQQNAG ILHERHYLGR VVW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4001070.0JQ400107.1 Petunia x hybrida putative transcription factor (TCP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265949.11e-113PREDICTED: transcription factor TCP18-like
TrEMBLI1VE900.0I1VE90_PETHY; Putative transcription factor
STRINGXP_009765929.11e-109(Nicotiana sylvestris)
STRINGXP_009616486.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-14TCP family protein