PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00087g00093.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 506aa    MW: 56174.7 Da    PI: 6.1254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00087g00093.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13322367454
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  Av YI++L
  Peaxi162Scf00087g00093.1 322 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVAYINEL 367
                               799***********************8.....8***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-5427217IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.27E-17310378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-14316371No hitNo description
PROSITE profilePS5088817.174318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16322379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-11322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDELNVSSSF SIPTLLSQGN NQPFPSLQQR LQYILKGQTD SWAYAIFWQT SNDDDGRLFL  60
AWGDGHFHGT KMRKGLFGAN NKGSSQQSER KNVIKGIQAL IGDNLDGSNN NINGDNIGLV  120
EDGTDVTDAE WFYVMSLAQS FSFGDGVPGK AFSSGSFVWL TGAQQLQFYS CERAKEAHIH  180
GINTLVCIPT SCGVLELGSS DLIKENWNLV QQVKSLFSST HENGHIEKNI SFADIGLVTG  240
LQEDCQKFND HDDNNSNDNN NNTRTKKTKT GETTVAAATV SVTFQDSDHS DSDCQLLDKP  300
VEKKTPKKRG RKPGVSREAP LNHVEAERQR REKLNHRFYA LRSVVPHVTK MDKASLLSDA  360
VAYINELRAK VDELELQVTS KSESKHRKLK IESMDSTTVD NMSTTTSVDQ IKPNNCSSAS  420
FGQNNLSLEV EVRILGPDAM IRVQSENVNY PSARLMRALQ ELELHVHHAS ISSVNDIMLQ  480
DIVVKVPQEL KTDDGLRSAL LRCLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-38262178192Transcription factor MYC3
4rqw_B3e-38262178192Transcription factor MYC3
4rs9_A3e-38262178192Transcription factor MYC3
4yz6_A3e-38262178192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508165.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1S4D3Z60.0A0A1S4D3Z6_TOBAC; transcription factor MYC3-like
STRINGXP_009604694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-79bHLH family protein