PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00087g00075.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 420aa    MW: 47324.2 Da    PI: 6.631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00087g00075.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13256302354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +h e+Er+RRd++N++f  Lr+++P+      ++++Ka+ L  Av YI++L
  Peaxi162Scf00087g00075.1 256 LNHVEAERQRRDKLNHRFYALRSVVPHV-----TRMDKASLLSDAVAYINEL 302
                               5899***********************8.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-112872IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142152.2E-2973163IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.028253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.82E-14253306No hitNo description
SuperFamilySSF474598.51E-18254320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-11257302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-17257316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-16259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDELIFSSSS FLSIPALFSQ GNNQPSILQQ KLQYILKNQT DSWTYGIFWQ TSNDDDGRLF  60
LSWDDGHFHG TNKDVEWFYV MSLVHSFSVD EGVLGKAFST GSFVWLTGPQ QLLFCSCKRA  120
KEAHVHGVKT LVCIPTSNGV LELGSVDIIK ENWSLVQQAK SLFSSDHHEG GPVQFVNGLQ  180
EDGQNFENNS SKKEEPRQKK YEEVATSDPV SFPDAEQSDS DCILLDHPVQ KSRAASKIRA  240
SKKRGRVTRE GCDKSLNHVE AERQRRDKLN HRFYALRSVV PHVTRMDKAS LLSDAVAYIN  300
ELKAKVDQLE SKLHSNSESV DNQSTTNSSP TLFRPIKKQT LEIEVKIMGP EDAMIRVQSE  360
NMNNVSTRLM RALQDLELYV HHASISNVNN IVLQDIVVRV PQGLKTEDGL KAALLRSFDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-24281649193Transcription factor MYC3
4rqw_B1e-24281649193Transcription factor MYC3
4rs9_A1e-24281649193Transcription factor MYC3
4yz6_A1e-24281649193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462596.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S3ZE820.0A0A1S3ZE82_TOBAC; transcription factor MYC2-like
STRINGXP_009592442.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-72bHLH family protein