PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00086g00063.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family RAV
Protein Properties Length: 338aa    MW: 38579.8 Da    PI: 9.8084
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00086g00063.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.3e-132977155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              s++kGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Peaxi162Scf00086g00063.1 29 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNNEDEAAKAYDIAAQRFRG 77
                              689***9788.8*********3.....5**********99*************98 PP

2B398.93e-31162263196
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+ tpsdv+k++rlv+pk++ae++      ++ + ++  l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+
  Peaxi162Scf00086g00063.1 162 FEKAVTPSDVGKLNRLVIPKQHAERYfplengNSASSNGLLLNFEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDI 246
                               89***************************987444457789******************************************** PP

                               EEEEE-SSSEE..EEEE CS
                        B3  80 vvFkldgrsefelvvkv 96 
                               v F+++g  +++l++ +
  Peaxi162Scf00086g00063.1 247 VSFQRSGGPDKQLYIDW 263
                               ****9998888888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-162985IPR016177DNA-binding domain
CDDcd000181.29E-242984No hitNo description
PfamPF008471.0E-72977IPR001471AP2/ERF domain
SMARTSM003801.3E-273091IPR001471AP2/ERF domain
PROSITE profilePS5103219.7963085IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-193085IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.4E-41156267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-31160264IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-28161255No hitNo description
PROSITE profilePS5086314.536162265IPR003340B3 DNA binding domain
PfamPF023622.5E-28162264IPR003340B3 DNA binding domain
SMARTSM010196.6E-25162267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGSGASVIID ADLINGIESA ESKNKLHSSR FKGVVPQPNG RWGAQIYEKH QRIWLGTFNN  60
EDEAAKAYDI AAQRFRGRDA VTNFKPLFDK QGEEIEISFL NSRSKAEIVD MLRKHTYNDE  120
LEHSKKVYSF DKNGNIRTCY KDGHVVSSFD IEKVNKAREL LFEKAVTPSD VGKLNRLVIP  180
KQHAERYFPL ENGNSASSNG LLLNFEDMNG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN  240
LKAGDIVSFQ RSGGPDKQLY IDWKARSLST QIQVDQVQPA VKMLRLFGVN ICKVQDVSTN  300
VVDDRNMMSS CAAGKRIRDQ MELLAFEFSK KQRVIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-5815926911120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614561.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
RefseqXP_016445426.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotP822801e-130RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A1S3XZP80.0A0A1S3XZP8_TOBAC; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_009614561.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-133related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]