PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00086g00052.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 382aa    MW: 43800.4 Da    PI: 6.5807
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00086g00052.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.72.8e-441142662135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa 70 
                               +gkkdrhski+T++g RdRRvRls+++a++fFdLqd LGfdk+sktieWL+ ++  aikel ++                +    
  Peaxi162Scf00086g00052.1 114 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDILGFDKASKTIEWLFSKSYDAIKELSENmpqkgyfdegnkinnsN---- 194
                               79**************************************************************88888777664443221.... PP

                       TCP  71 seceaesssssasnsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                                 +    ssss+++s+ +              +  +s+++ k++ k  + + n++k esr kar+rarert+ekm+ k +
  Peaxi162Scf00086g00052.1 195 --M----SSSSEGKSHDEslmseceevvsrweE--NSNNEVKEKGKLREIVDNPHKkESRYKARERARERTKEKMMVKGH 266
                               ..1....11111111111345566667776532..3333455555555556899988******************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-45114262IPR005333Transcription factor, TCP
PROSITE profilePS5136934.883116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.44243260IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MFPQSNNDEP FLYTSKTFLE RSFTYDHQNP SSSSRQEDYP FLLNFPSPYL DNHELPLSQI  60
LPQQHQELEV IHHGMEAYPS KAHISGDTST VEMSGEAKTS SKKRNVGATP RRRTGKKDRH  120
SKICTAQGVR DRRVRLSLHI ARKFFDLQDI LGFDKASKTI EWLFSKSYDA IKELSENMPQ  180
KGYFDEGNKI NNSNMSSSSE GKSHDESLMS ECEEVVSRWE ENSNNEVKEK GKLREIVDNP  240
HKKESRYKAR ERARERTKEK MMVKGHEKYK EWYEKNPNNI PDRLGSSSNT SGFLEESNKS  300
NSYNTCSVNQ EKGSPHEASS QSLEHQFANS GIIDENYSTT GGIDSGNCFM SFPGNWEMIN  360
FTPMPNVVQI PYAALNSEFE QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2742490.0JF274249.1 Petunia x hybrida TCP1 gene, complete cds.
GenBankKR0021030.0KR002103.1 Petunia x hybrida TCP transcription factor 1 (TCP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366063.11e-153PREDICTED: transcription factor TCP12
TrEMBLG0ZGI60.0G0ZGI6_PETHY; Putative transcription factor
STRINGPGSC0003DMT4000193241e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-30TCP domain protein 12