PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00078g00195.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 150aa    MW: 16848.1 Da    PI: 8.8327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00078g00195.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-192171356
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              + GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+++++g+
  Peaxi162Scf00078g00195.1 21 CIGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDTAEEAAMAYDQAALSMRGP 71
                              67******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.0222078IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-222180IPR016177DNA-binding domain
PRINTSPR003671.1E-82132IPR001471AP2/ERF domain
PfamPF008474.1E-132270IPR001471AP2/ERF domain
CDDcd000182.56E-292379No hitNo description
Gene3DG3DSA:3.30.730.101.7E-292379IPR001471AP2/ERF domain
SMARTSM003802.6E-332384IPR001471AP2/ERF domain
PRINTSPR003671.1E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGGNRPPLNY NSQKHQKAQH CIGVRKRPWG KFAAEIRDST RNGIRVWLGT FDTAEEAAMA  60
YDQAALSMRG PSTCLNFPVE QVRESILKME CSYLKDGSMS PAAALKEKHK KRSSSSRKNN  120
QVNLKEENVL IFEDLGPDLL DELLSEYSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-271779264ATERF1
3gcc_A4e-271779264ATERF1
5wx9_A8e-2723801774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804881.12e-74PREDICTED: ethylene-responsive transcription factor 15-like
RefseqXP_016464424.13e-74PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotA0A3Q7I5Y99e-47ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S3ZJ476e-73A0A1S3ZJ47_TOBAC; ethylene-responsive transcription factor 15-like
TrEMBLA0A1U7YSG14e-73A0A1U7YSG1_NICSY; ethylene-responsive transcription factor 15-like
STRINGXP_009804881.17e-74(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-28ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]