PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00078g00043.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 194aa    MW: 22047.9 Da    PI: 4.731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00078g00043.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-181362356
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a+  l+g+
  Peaxi162Scf00078g00043.1 13 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKGH 62
                              9****999.**********8...557***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-221270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-321270IPR001471AP2/ERF domain
PROSITE profilePS5103223.2221269IPR001471AP2/ERF domain
SMARTSM003805.3E-351275IPR001471AP2/ERF domain
PfamPF008471.9E-121362IPR001471AP2/ERF domain
PRINTSPR003671.1E-121324IPR001471AP2/ERF domain
CDDcd000181.04E-211371No hitNo description
PRINTSPR003671.1E-125171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEDLQESNNI QMYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK  60
GHKAQLNFPE LIDSFPKPTS SKPEDVQMAA HEAAVRFKQQ TPMPPENGGS DGCGTVVPVR  120
VGLSPSQIQA INESPMDSPK MWMELAGALL LRDPVREYTC PSYSYNDPMI LCEDIGEFEE  180
WDEMEQHHGS IWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181174468ATERF1
3gcc_A2e-181174468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754509e-67HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257968.11e-104PREDICTED: ethylene-responsive transcription factor ERF022-like
TrEMBLA0A1J6IEM11e-103A0A1J6IEM1_NICAT; Ethylene-responsive transcription factor erf022
STRINGXP_009619745.11e-103(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-51ERF family protein