PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00073g01424.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 267aa    MW: 30382.9 Da    PI: 10.7073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00073g01424.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1975125155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               +++kGVr++  +g+Wv+eIr+p        kr++lg+f taeeAa+a+++a+  ++g
  Peaxi162Scf00073g01424.1  75 KKFKGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEEAARAYDEAAILMNG 125
                               59*****999.**********8.....335**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-3375135No hitNo description
Gene3DG3DSA:3.30.730.101.8E-3176133IPR001471AP2/ERF domain
PROSITE profilePS5103221.41776133IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2076134IPR016177DNA-binding domain
PfamPF008475.6E-1276125IPR001471AP2/ERF domain
SMARTSM003804.8E-3876139IPR001471AP2/ERF domain
PRINTSPR003673.9E-107788IPR001471AP2/ERF domain
PRINTSPR003673.9E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRVFIVIKVR SSVKFEKDGE WKKKKKSFSF FQIKPDLRVG KSFVLRIAFS FTQPAVMEIK  60
VQSIDEQRTN MVQSKKFKGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE EAARAYDEAA  120
ILMNGQVAKT NFPIVKENPV NNSGINNEKK FPLSSSSMLS TVLNAKLRKC CKDNPAPSMT  180
CLRLDNDNCH IGVWQKRSGK QSGSNWLTKI ELGKKEETHQ SHESMNSWSV SSTSGSSSSS  240
SSSGISDLGV RSKIGQFHFY YFHKFLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16721331072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260506.15e-98PREDICTED: ethylene-responsive transcription factor SHINE 3-like
RefseqXP_019260507.15e-98PREDICTED: ethylene-responsive transcription factor SHINE 3-like
SwissprotQ3E9589e-65SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A314LDG81e-96A0A314LDG8_NICAT; Ethylene-responsive transcription factor shine 3
STRINGXP_009758054.16e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.22e-56ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]