PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00067g00163.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YB
Protein Properties Length: 166aa    MW: 18704 Da    PI: 8.0581
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00067g00163.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.26.5e-5529124297
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               +eqdr+lPianv+rimk++lP nakisk++ket+qecvsefisfvt+easdkcq+ekrkt+ngdd++wal++lGf++y+eplk y
  Peaxi162Scf00067g00163.1  29 KEQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTGEASDKCQKEKRKTVNGDDICWALGSLGFDNYAEPLKRY 113
                               89*********************************************************************************** PP

                     NF-YB  87 lkkyrelegek 97 
                               l+kyrelegek
  Peaxi162Scf00067g00163.1 114 LHKYRELEGEK 124
                               *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-5524147IPR009072Histone-fold
SuperFamilySSF471133.55E-4231155IPR009072Histone-fold
PfamPF008082.9E-273498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.5E-206280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.5E-208199No hitNo description
PRINTSPR006153.5E-20100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVDNINILRA NEGHKYNSIS GSSSEGGIKE QDRLLPIANV GRIMKQILPP NAKISKESKE  60
TMQECVSEFI SFVTGEASDK CQKEKRKTVN GDDICWALGS LGFDNYAEPL KRYLHKYREL  120
EGEKANQNKA AGNNSIEERE RDEPQRKSTV SPTHNANNFF LPGRFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4628119192Transcription factor HapC (Eurofung)
4g92_B2e-4628119192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264713.19e-89PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO822484e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A314L5472e-87A0A314L547_NICAT; Nuclear transcription factor y subunit b-5
STRINGXP_009775948.11e-85(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]