PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00065g01120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 264aa    MW: 29686.9 Da    PI: 5.2255
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00065g01120.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.2e-2192141255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++a+k+++g
  Peaxi162Scf00065g01120.1  92 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDEAAKRIRG 141
                               8********.**********94....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-1592141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3392150IPR001471AP2/ERF domain
SMARTSM003801.1E-4092155IPR001471AP2/ERF domain
CDDcd000182.55E-3592150No hitNo description
PROSITE profilePS5103224.42192149IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2392149IPR016177DNA-binding domain
PRINTSPR003676.2E-1293104IPR001471AP2/ERF domain
PRINTSPR003676.2E-12115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MCGGAIISDY EPVGNRCRKI SARDLWAELD PFSDDDFWSS SSISGKADSS STHHSYNKLK  60
KSDSSCNLKQ LDKGTSVKVE KESSGPRPRK NKYRGIRQRP WGKWAAEIRD PQKGVRVWLG  120
TFNTAEEAAR AYDEAAKRIR GDKAKLNFPE PPSTSVPPTP PPAKRQCTST IPDQLALLES  180
SNFMTENPSL MNFGYQNQTP YYPVEMAAGE DHHQDYELKE QISNLESFLE LEPDSSQYSG  240
FGDSDPLNLF LMEDIAATQQ QLFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2393149360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2595990.0HQ259599.1 Petunia x hybrida ethylene-responsive-element-binding factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237585.11e-141PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLE3VVR41e-174E3VVR4_PETHY; Ethylene-responsive-element-binding factor 5
STRINGXP_009597158.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-41ethylene-responsive element binding protein