PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00064g00056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 81aa    MW: 9320.46 Da    PI: 8.4367
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00064g00056.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-10347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+   +++ +a +++ ++   +W  Ia+++g g++++++k ++ 
  Peaxi162Scf00064g00056.1  3 SWTAKQNKKFEEALALYDKDtpdRWYNIAKCVG-GKSAEEVKRHYE 47
                              6********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.44154IPR017884SANT domain
SMARTSM007179.8E-7152IPR001005SANT/Myb domain
PfamPF002495.1E-8347IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-13357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-5356IPR009057Homeodomain-like
CDDcd001671.43E-7350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASWTAKQNK KFEEALALYD KDTPDRWYNI AKCVGGKSAE EVKRHYELLV KDIMQIENDQ  60
VPLPNYRAAG SNGRGYANEQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-294721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611761.15e-51PREDICTED: protein RADIALIS-like 5
RefseqXP_016447037.15e-51PREDICTED: protein RADIALIS-like 5
SwissprotF4JVB83e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S3Y5711e-49A0A1S3Y571_TOBAC; protein RADIALIS-like 5
STRINGXP_009611761.12e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]