PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00059g00101.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 126aa    MW: 14304.5 Da    PI: 10.5069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00059g00101.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18858256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr ++ +gr++AeIr p   gk+ r++lg+f taeeAa a++aa+++++g+
  Peaxi162Scf00059g00101.1  8 HYRGVRKRP-WGRYAAEIRNP---GKKYRVWLGTFNTAEEAALAYDAAAREFRGA 58
                              7********.**********8...557*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-13857IPR001471AP2/ERF domain
PROSITE profilePS5103223.367865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-32865IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22866IPR016177DNA-binding domain
SMARTSM003801.9E-35871IPR001471AP2/ERF domain
CDDcd000181.96E-18865No hitNo description
PRINTSPR003678.6E-11920IPR001471AP2/ERF domain
PRINTSPR003678.6E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MVLVKEVHYR GVRKRPWGRY AAEIRNPGKK YRVWLGTFNT AEEAALAYDA AAREFRGAKA  60
KTNFPLPFKN PPLTATLCNP LVVKQQQPVH SDSKLSSIVD DNRCNGGVVR RRFLDFDLNF  120
APPMET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22466164ATERF1
3gcc_A2e-22466164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281207.12e-35ethylene-responsive transcription factor 9
RefseqXP_021681223.13e-35ethylene-responsive transcription factor 9-like
RefseqXP_024158160.11e-34ethylene-responsive transcription factor 4-like
SwissprotQ9LW491e-35ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLR0GP275e-34R0GP27_9BRAS; Uncharacterized protein
TrEMBLS4TAK88e-34S4TAK8_HEVBR; AP2/ERF super family protein
STRINGXP_006281207.18e-35(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-27erf domain protein 9