PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00040g00018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YB
Protein Properties Length: 190aa    MW: 21482.6 Da    PI: 4.3452
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00040g00018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.76.7e-1419114896
                     NF-YB   8 lPianvsrimkkvlP.....anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               lP + v r++k+ l      +n+ is  +d+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f +++eplk+
  Peaxi162Scf00040g00018.1  19 LPKTIVRRLVKEKLTqlstdKNSDISllRDSLTAFSESARLFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLKA 103
                               6777777888777652212235566544688889999************************************************ PP

                     NF-YB  86 ylkkyrelege 96 
                                l+ +r+ +++
  Peaxi162Scf00040g00018.1 104 SLEVFRQKNAK 114
                               ******98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-267160IPR009072Histone-fold
SuperFamilySSF471138.95E-2118137IPR009072Histone-fold
PfamPF008082.1E-81989IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAEVEKQKDK EKVVEQEGLP KTIVRRLVKE KLTQLSTDKN SDISLLRDSL TAFSESARLF  60
IHYLSATAND ICKESKRQTI NAEDVFKALE EIEFPEFIEP LKASLEVFRQ KNAKRKLGSS  120
KSTESNKKSK LKEPVENGKG KMKEQPSDNE NEDEQAEEEA VNENEDGQAE EESNGQAEEE  180
SDEQEASADD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A1e-111813117125DNA polymerase epsilon subunit D
5y27_A1e-111813117125DNA polymerase epsilon subunit D
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170041e-44AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence.
GenBankHG9755231e-44HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251060.11e-83DNA polymerase epsilon subunit 3
TrEMBLA0A3Q7IZT63e-82A0A3Q7IZT6_SOLLC; Uncharacterized protein
STRINGSolyc11g068480.1.15e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-25nuclear factor Y, subunit B11