PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g02229.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 378aa    MW: 41833.9 Da    PI: 4.4242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g02229.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-19110159255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa+a++  +++++g
  Peaxi162Scf00038g02229.1 110 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDVEARRIRG 159
                               69*******.**********965...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.7E-37110173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32110169IPR001471AP2/ERF domain
CDDcd000187.24E-33110168No hitNo description
PROSITE profilePS5103223.933110167IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22110169IPR016177DNA-binding domain
PfamPF008471.1E-11111159IPR001471AP2/ERF domain
PRINTSPR003671.1E-11111122IPR001471AP2/ERF domain
PRINTSPR003671.1E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MCGGAIISDY IPPNRTSRRL TAELLWGRSD LSKKSKNPSN YHSKPLRSQI VDLDDDFEAD  60
FQEFKDFSDD EDVKPFAFSA PKQSTGSKSV KSADSEKDAD SSSKRKRKNQ YRGIRQRPWG  120
KWAAEIRDPS KGVRVWLGTF NTAEEAARAY DVEARRIRGN KAKVNFPDEA PVPSSRLAVK  180
VNPQKVLPSL DSVQPDTTVM NNLRNGYYDS LGFLEEKPVA KQYGYEDGGS TSVDTGFDSF  240
APSAGADIYF NSDVGSNSFD CSDFGWGEPC TRTPEISSVL SAAIESNEAQ FVEDARPEKK  300
LKSDPNNPVA DDGNTVNELS EELSAFESEM KFLQIPYLEG NWDASADTFL NTSATQDGEN  360
AMDLWSFDDV PSLMGGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21110167260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2595960.0HQ259596.1 Petunia x hybrida ethylene-responsive-element-binding factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259974.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLE3VVR10.0E3VVR1_PETHY; Ethylene-responsive-element-binding factor 2
STRINGXP_009775920.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-70related to AP2 12