PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00031g00144.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 220aa    MW: 24028 Da    PI: 9.6575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00031g00144.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.9e-212272256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g+
  Peaxi162Scf00031g00144.1 22 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 72
                              6********.**********8...557*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-142271IPR001471AP2/ERF domain
SMARTSM003802.8E-372285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-322279IPR001471AP2/ERF domain
PROSITE profilePS5103224.0922279IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-222280IPR016177DNA-binding domain
CDDcd000182.89E-202279No hitNo description
PRINTSPR003672.3E-112334IPR001471AP2/ERF domain
PRINTSPR003672.3E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAPKEKGGAT IGKVNGSSKE VHYRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAK  60
AYDAAAREFR GAKAKTNFPL DDLKINVVEK KYNDKSYSPS QSSTVESSSR DGAVNVDSSP  120
LDLSLGGSNI GHNSVIFPLQ NHQLRTFGPP TVNHMYYLEA LARAGVINLE KNQPKKTVDF  180
LGGTCGSESD SSSVIDFNHV KPTIKGLNLD LNFPPPENMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-232280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2596000.0HQ259600.1 Petunia x hybrida ethylene-responsive-element-binding factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305482.11e-89ethylene-responsive transcription factor 4-like
TrEMBLE3VVR51e-162E3VVR5_PETHY; Ethylene-responsive-element-binding factor 6
STRINGPGSC0003DMT4000587519e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-28erf domain protein 9