PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00030g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 238aa    MW: 27606.4 Da    PI: 7.2735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00030g00022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1892143155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++ykGVr+++ +g+++AeIrdp     k +r +lg++ t+e+Aa a+++ + kl+g
  Peaxi162Scf00030g00022.1  92 KKYKGVRRRP-WGKYAAEIRDP---DrKGARLWLGTYETPEDAALAYDRTAFKLRG 143
                               59********.**********8...3245*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.00E-3392153No hitNo description
PROSITE profilePS5103224.06593151IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2393152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3093152IPR001471AP2/ERF domain
SMARTSM003802.7E-3693157IPR001471AP2/ERF domain
PfamPF008473.2E-1393143IPR001471AP2/ERF domain
PRINTSPR003671.8E-994105IPR001471AP2/ERF domain
PRINTSPR003671.8E-9117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQGVSSLDQF ELNFLDSMQH LFNDPDSTQI FSELNQVHNN FQFQTPNTHS NFENTTFSHN  60
LVHLNHQENT DHVTLLQDNN KNEETYSLEE RKKYKGVRRR PWGKYAAEIR DPDRKGARLW  120
LGTYETPEDA ALAYDRTAFK LRGSRAVLNF PHLIQSNVTE INRVRPRRRL RSPEINLSSD  180
QLSSSSSSLG EYNSINEEPS SKRRYVESIN SVAKCNNNLF SSQSIMERCL PSNFFSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-3092151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-3092156468ATERF1
3gcc_A2e-3092156468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170RPRRRLR
2165171PRRRLRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759672.13e-80PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1U7UUE58e-79A0A1U7UUE5_NICSY; ethylene-responsive transcription factor 13-like
STRINGXP_009759672.11e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-35ethylene-responsive element binding factor 13