PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00024g00291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 240aa    MW: 26967.8 Da    PI: 5.0303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00024g00291.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1890141256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g+
  Peaxi162Scf00024g00291.1  90 SYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAETAALAYDQAAFSMRGA 141
                               69*******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.89E-2989149No hitNo description
SMARTSM003806.6E-3790154IPR001471AP2/ERF domain
PfamPF008472.0E-1390140IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2290150IPR016177DNA-binding domain
PROSITE profilePS5103223.07790148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3090149IPR001471AP2/ERF domain
PRINTSPR003674.0E-1091102IPR001471AP2/ERF domain
PRINTSPR003674.0E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDSSSYSSHF FYPMNSDLSS DSSWEWSNFN STSLPFNVDD SEEMLLFGVL ANAAQETTSE  60
TVTSYHVKDE EVSSKIEVQE KQEKPIKDKS YRGVRRRPWG KFAAEIRDST RNGVRVWLGT  120
FDSAETAALA YDQAAFSMRG ASAILNFPVE TVRESLRDMK CQVDDNCSPV VALKKRHSMR  180
KRSLNKKTSS SSNSKVVREV KMENVNNVVV FEDLGADFLE QLLSTSSSDQ SSSDASFSPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-29911501574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233068.11e-127PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-73ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1J6KC411e-126A0A1J6KC41_NICAT; Ethylene-responsive transcription factor 1b
STRINGXP_009606435.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-58ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]