PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00024g00272.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 160aa    MW: 17995.1 Da    PI: 9.979
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00024g00272.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-202879256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr+++ +g+++AeIrdp+    r  +r +lg+f+taeeAa+a+++a+ +l+g+
  Peaxi162Scf00024g00272.1 28 KYRGVRRRP-WGKFAAEIRDPT----RpgARQWLGTFDTAEEAARAYDRAAFNLRGH 79
                              8********.**********96....355**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-362892IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-232887IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-312888IPR001471AP2/ERF domain
PROSITE profilePS5103224.3292886IPR001471AP2/ERF domain
CDDcd000181.08E-302887No hitNo description
PfamPF008475.4E-142879IPR001471AP2/ERF domain
PRINTSPR003674.3E-112940IPR001471AP2/ERF domain
PRINTSPR003674.3E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEGNSFRGKK AMQDKEGGNT KKGNEEVKYR GVRRRPWGKF AAEIRDPTRP GARQWLGTFD  60
TAEEAARAYD RAAFNLRGHL ATLNFPNEYY NQLTHPPLYY RHSFSSPTNI FGSSNISSGS  120
LERGSSSSTG KTREIIELEC LDNSVLEELL GAADTKMKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-292389975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233066.13e-91PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1J6KS498e-90A0A1J6KS49_NICAT; Ethylene-responsive transcription factor erf098
STRINGXP_009780511.13e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]