PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00021g00218.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 364aa    MW: 40382.1 Da    PI: 10.4112
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00021g00218.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP981.7e-301482271589
                       TCP  15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg.... 88 
                               v+gR+RR+R++a+caar+F+L++eLG+++d++ti WLlq a+p+i+ +tg+++++a ++               + +++++    
  Peaxi162Scf00021g00218.1 148 VEGRGRRIRMPATCAARVFQLTRELGHKTDGETIRWLLQHAEPSIISATGSGTTPAIAVsvngtlkI------PTTTENNDerkr 226
                               89*************************************************9999954432221221......111111111111 PP

                       TCP  89 k 89 
                               k
  Peaxi162Scf00021g00218.1 227 K 227
                               1 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136918.399140195IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-24150240IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDSTNINNIP SFMAVPPSAR RRHMVPPTTT IPIISPKQEP QDLADQKPPF IKVTLPTPTM  60
RHSVSTAQLP MSPPPPVQQH NKVASSKDRH TKHSPGFYKG NEIQFSTINL NFLQENGHIF  120
LKKHFEQTQQ QQHFEQTPFN NIKFYFLVEG RGRRIRMPAT CAARVFQLTR ELGHKTDGET  180
IRWLLQHAEP SIISATGSGT TPAIAVSVNG TLKIPTTTEN NDERKRKRCS NSEFIDVKQS  240
NNHIATTINK EHVGVDVKHS NNVTTSFAPV MSIVPSHYQT IMPVSSMLAR NYSMMAAPST  300
VWIIPQITVS SIPSSRTTAA THHQELIMQP SSCVIVRPAT LLDISSSAVI PLLSATASNI  360
KHDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754408e-41HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755138e-41HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601442.16e-74PREDICTED: transcription factor TCP9-like
RefseqXP_016502708.16e-74PREDICTED: transcription factor TCP9-like
TrEMBLA0A1S4CN851e-72A0A1S4CN85_TOBAC; transcription factor TCP9-like
STRINGXP_009601442.12e-73(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-46TCP family protein