PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00021g00213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 211aa    MW: 22362.1 Da    PI: 10.012
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00021g00213.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.59.6e-3816109391
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                               +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++  +++  +ss+s  
  Peaxi162Scf00021g00213.1  16 VKKAPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPATFStlSNSLLNSSTS-- 98 
                               699*****************************************************************777432222222222.. PP

                       TCP  86 ssg.....kaa 91 
                               + +     k+a
  Peaxi162Scf00021g00213.1  99 TVSapldhKSA 109
                               22233543333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3421116IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6752175IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSTSVEGNGA AANNGVKKAP AKDRHSKVDG RGRRIRMPIV CAARVFQLTR ELGHKSDGQT  60
IEWLLRQAEP SIIAATGTGT IPATFSTLSN SLLNSSTSTV SAPLDHKSAP FLLGKRLRSE  120
EDGEQNKDVV GPTAGFWAVP ARPDYGQVWS FAAAPPQEMG LLNSANSRFM GEVSSAGRVG  180
NYFPIAQGHL NLLASLSGPV QLGRRDDDGG H
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2394359e-55AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBankGQ4963339e-55GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBankHG9754409e-55HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755139e-55HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233810.14e-99TCP transcription factor 15
SwissprotQ9FMX24e-76TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV51e-97G3BGV5_SOLLC; TCP transcription factor 15
STRINGSolyc01g008230.2.12e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-59TCP family protein