PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00017g03011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 213aa    MW: 24341.2 Da    PI: 8.3118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00017g03011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-174493255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Peaxi162Scf00017g03011.1 44 KFIGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDIAEEAALAYDSAARLLRG 93
                              899******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-3043103No hitNo description
PROSITE profilePS5103219.33544101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2744101IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-1944102IPR016177DNA-binding domain
PfamPF008471.3E-114493IPR001471AP2/ERF domain
SMARTSM003801.1E-3244107IPR001471AP2/ERF domain
PRINTSPR003679.6E-74556IPR001471AP2/ERF domain
PRINTSPR003679.6E-76783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENSKSPSEP LNNTSSKNKD DLFQEKQVTK RKSKQLPSRN DGKKFIGVRQ RPSGRWVAEI  60
KDSSQKLRLW LGTFDIAEEA ALAYDSAARL LRGRNAKTNF KYQQESCNML EKNPRLYQLL  120
KHAIMKKLAG KCQNECLQTQ ESTIVCASDG DKNKEEIFRL QHGISSKVYS SVVVAPSFSI  180
TQSGREEEEE EEENQYQAAE FFDSLFSHAN HEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1442106368ATERF1
3gcc_A2e-1442106368ATERF1
5wx9_A6e-14441031474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-41HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248985.12e-83PREDICTED: ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A1J6IBE34e-82A0A1J6IBE3_NICAT; Ethylene-responsive transcription factor rap2-11
STRINGXP_009762079.13e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11