PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g00712.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 88aa    MW: 9900.08 Da    PI: 9.0789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g00712.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-10753144
                              TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              r +WT++  +l+ +a +q+ ++   +W  +ar +g g+++ ++k ++
  Peaxi162Scf00016g00712.1  7 RSSWTPQQNKLFERALAQFDKDtpdRWQNVARAVGGGKSADDVKRHY 53
                              789*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.76257IPR017877Myb-like domain
SMARTSM007171.7E-7659IPR001005SANT/Myb domain
PfamPF002492.8E-7753IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-12865IPR009057Homeodomain-like
CDDcd001671.19E-5953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASGSVRSSW TPQQNKLFER ALAQFDKDTP DRWQNVARAV GGGKSADDVK RHYDILLEDL  60
RRIESGLVPL PSYTNRAAAE EQRLLTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-25173173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261955.12e-48PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1738e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6JJL54e-47A0A1J6JJL5_NICAT; Protein radialis-like 5
STRINGXP_009779120.17e-47(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-32RAD-like 6