PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00013g00917.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 350aa    MW: 39623 Da    PI: 8.1987
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00013g00917.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.1e-381252853132
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                                 kdrhski T++g+RdRR+Rls++ a++fF Lqd+L fdk+skti WLl +++ aikelt+                       
  Peaxi162Scf00013g00917.1 125 SNKDRHSKINTAQGPRDRRMRLSLDAARKFFNLQDMLQFDKPSKTIGWLLIKSEYAIKELTKGiggaldpkqsftstrnigaist 209
                               579****************************************************************999999988888877753 PP

                       TCP  66 ssssa...sec.......eaesssssasnsssg..............kaaksaakskksqksaasalnlakesrakarararert 126
                               +  ++   sec                     +               +++ ++k+k + ++ a+++ + +esr+ ara+arert
  Peaxi162Scf00013g00917.1 210 N--ASsniSECeskvvdnL-------------TiasdefssndkmpeGSSSIKEKKKAKVARRATFHTFTRESRNLARANARERT 279
                               1..3322344432222211.............0122233344567764444555888888888888******************* PP

                       TCP 127 rekmri 132
                               + k+++
  Peaxi162Scf00013g00917.1 280 KRKKSL 285
                               *99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-38125283IPR005333Transcription factor, TCP
PROSITE profilePS5136933.11126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.683265282IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MYPPSNNNCN YNNPISSSLF HNIPSPYNQY EQESLFQYYH DYYLQEQPVP FVDDPGLDIF  60
VENAETPNNQ LNCTDSVKIL DENVANSQNE EGGEGEEGCE NKGGEMSSTT SNRQQISRNK  120
TSRSSNKDRH SKINTAQGPR DRRMRLSLDA ARKFFNLQDM LQFDKPSKTI GWLLIKSEYA  180
IKELTKGIGG ALDPKQSFTS TRNIGAISTN ASSNISECES KVVDNLTIAS DEFSSNDKMP  240
EGSSSIKEKK KAKVARRATF HTFTRESRNL ARANARERTK RKKSLEDLCA QVQHSNMVNH  300
SLNEVEELTS HQNNQLLGAK EINRADEKSV YRLAILWKAV RILARELIKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608156.12e-78PREDICTED: transcription factor TCP12-like isoform X2
RefseqXP_016448763.12e-78PREDICTED: transcription factor TCP12-like isoform X2
TrEMBLA0A1J6ICT79e-78A0A1J6ICT7_NICAT; Transcription factor teosinte branched 1
STRINGXP_009608155.17e-78(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-24TCP domain protein 12