PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00013g00072.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 316aa    MW: 35316.2 Da    PI: 8.7896
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00013g00072.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.15.7e-2946129383
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas 83 
                               g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl + k  i++l+ + +++as++   ++++  ++++
  Peaxi162Scf00013g00072.1  46 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVVDWLLDATKDDIDKLPPLHFPPASFShlfNPNTPYNMKD 129
                               79*************************************************************999997775553333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.6247105IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2547119IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNTSKQEPGD TNKNKFSSSR ITPSSSRQSW ASFKNPRIVR VSRSFGGKDR HSKVCTIRGL  60
RDRRIRLSVP TAIQLYDLQE RLGLSQPSKV VDWLLDATKD DIDKLPPLHF PPASFSHLFN  120
PNTPYNMKDG VKVADNFDDN MREKSTFGGK EKWIASSDEQ ENQEGSTIGG YVPLLSSQNF  180
FQLGNQSSLP AGMLNNTMQF NSNLSLTPFG NNSFSSQTEN CHQNNFPISF APSNSFPSGS  240
QLYFCQNGTT FSSIVPPYMT TNNSQLNHFH LLNSSSPLVP TLQLISSKGL NSQEEDDHDN  300
HLQQKEGTGS YHLKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1852106155Putative transcription factor PCF6
5zkt_B3e-1852106155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235712.11e-116PREDICTED: transcription factor TCP17-like
TrEMBLA0A1J6KJU71e-114A0A1J6KJU7_NICAT; Transcription factor tcp5
STRINGXP_009593547.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5