PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00011g00321.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ZF-HD
Protein Properties Length: 342aa    MW: 37892.3 Da    PI: 7.6905
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00011g00321.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.48.3e-3465120458
               ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                               v YkeClkNhAa++GghavDGCgEfmps++++ +++++lkCaACgCHRnFH+r++ 
  Peaxi162Scf00011g00321.1  65 VLYKECLKNHAANIGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHKRDEP 120
                               78******************************9*******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-2865119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.76867118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-3067118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2367117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.25E-18199268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-29199269IPR009057Homeodomain-like
TIGRFAMsTIGR015656.7E-26207264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDLTNNTTTV KNQEQVEQIV AEIEVETPTN THQIHKPKPF STTNGVLKRK NPYTLPHNLH  60
HPVVVLYKEC LKNHAANIGG HAVDGCGEFM PSPTANPADP TSLKCAACGC HRNFHKRDEP  120
EELKSIPLPA IEYKPHHRHH PPPPLPPGGD HSGSPNDESP SPPPISSAYY PSSAPHMLLA  180
LSTGFSGEKN ILNPITRTPM TDNSNSRKRF RTKFTPDQKA KMMEFAEQVG WKMQKRDEDL  240
VSKFCNEIGV EKGVLKVWMH NNKNTVGKKS DQPNSDDKSN NNDNGIGNGN GNSNENYVSG  300
FCIVSRNNTD TEFHKYENKK DDIPSQVIIN HVVVTTNGSS TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-212062651675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233362.11e-116PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG08e-69ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLK4B7641e-116K4B764_SOLLC; Uncharacterized protein
STRINGSolyc02g067320.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.19e-62zinc finger homeodomain 1