PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00005g00493.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YB
Protein Properties Length: 181aa    MW: 19678.9 Da    PI: 6.7906
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00005g00493.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.68.7e-5933130198
                     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkv
  Peaxi162Scf00005g00493.1  33 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKV 117
                               69*********************************************************************************** PP

                     NF-YB  86 ylkkyrelegekk 98 
                               yl++yre+eg++k
  Peaxi162Scf00005g00493.1 118 YLTRYREMEGDTK 130
                               **********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5529145IPR009072Histone-fold
SuperFamilySSF471135.43E-4136139IPR009072Histone-fold
PfamPF008082.2E-2839103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-216785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-2186104No hitNo description
PRINTSPR006152.5E-21105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MADGQGSSRS PASPNGGGSH ESGGDQSPRS SNVREQDRFL PIANISRIMK KALPANGKIA  60
KDAKETVQEC VSEFISFITS EASDKCQREK RKTINGDDLL WAMATLGFED YIEPLKVYLT  120
RYREMEGDTK GSAKPAEGSV KREGMQPSPG SQLAHQGSFS QGMNYGNSQS QHMMVPMQGT  180
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4833124192Transcription factor HapC (Eurofung)
4g92_B5e-4833124192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620316.11e-126PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X4
RefseqXP_016449854.11e-126PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
SwissprotQ8VYK44e-92NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1S3YCJ21e-124A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1
STRINGXP_009620316.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-94nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]