PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g01526.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 726aa    MW: 82729 Da    PI: 8.4898
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g01526.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20114163255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Peaxi162Scf00003g01526.1 114 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 163
                               59*******.**********82....48************************998 PP

2AP262.68.5e-20352401255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aaka+++a+ +++g
  Peaxi162Scf00003g01526.1 352 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAAKAYDKAAIEFRG 401
                               59*******.**********82....48************************998 PP

3AP262.49.7e-20590639255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Peaxi162Scf00003g01526.1 590 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 639
                               59*******.**********82....48************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.698114171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-31114171IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-21114171IPR016177DNA-binding domain
PfamPF008472.3E-13114163IPR001471AP2/ERF domain
CDDcd000183.17E-32114170No hitNo description
SMARTSM003807.5E-37114177IPR001471AP2/ERF domain
PRINTSPR003673.7E-11115126IPR001471AP2/ERF domain
PRINTSPR003673.7E-11137153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-30352409IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21352409IPR016177DNA-binding domain
PfamPF008472.8E-13352401IPR001471AP2/ERF domain
CDDcd000181.41E-21352408No hitNo description
SMARTSM003802.8E-36352415IPR001471AP2/ERF domain
PROSITE profilePS5103224.474352409IPR001471AP2/ERF domain
CDDcd000189.72E-33590647No hitNo description
Gene3DG3DSA:3.30.730.105.0E-31590647IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21590647IPR016177DNA-binding domain
PfamPF008472.3E-13590639IPR001471AP2/ERF domain
SMARTSM003802.9E-37590653IPR001471AP2/ERF domain
PROSITE profilePS5103224.829590647IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MQRSITKRIA KQEETISINN NILQPKLTNE QEFSIMVAAL TNVITGTYND VTQQFQFATP  60
STSMSSTFEP PMFRVPTEPE PCQFCKIKGC LGCNYFGTEE NKITKIVGKK KKKNYRGVRQ  120
RPWGKWAAEI RDPRRAARVW LGTFNTAEDA ARAYDKAAIE FRGPRAKINF SFADYTSILN  180
QNNSSMSHQN KQEVQLQQGY TNFCTTSQEE EEIWDQLILS DNDIQDLSML DFNGILTASK  240
SITKRTKQEE TISINNNILQ PKLTNEQEFS IMVAALSNVI TGTYNDVTQQ FQFATPSTSM  300
SSTFEPPMFR VPTEQEPCQF CKIKGCLGCN YFGTTTEENK ITKIVGKKKK KNYRGVRQRP  360
WGKWAAEIRD PRRAARVWLG TFNTAEDAAK AYDKAAIEFR GPRAKINFSF ADYTSILNQN  420
NSSMSHQNKQ EVQLQQGYTN FCTTSQEEEE IWDQLILSDN DIQDLRMLDF NGYLTASKSI  480
TKRAKQDETT SINNNILQPK LTNEQEFSIM VAALTNVITG AYNNVTQPFQ FATPSTSMSS  540
TFEPPMFRVP TEPEPCQFCK IKGCLGCNYF DTTTEENKST KIVGKKKKKN YRGVRQRPWG  600
KWAAEIRDPR RAARVWLGTF NTAEDAARAY DKAAIEFRGP RAKLNFAFAD YTSIQQQNIS  660
TSANVSPQKQ QEPIVQLQHG INTDHIGTGK LEEEFWDQLI SDNEFQDLSM MDFNAETSDG  720
RNTRSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-23111646262ATERF1
3gcc_A3e-23111646262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1583589GKKKKKN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740222e-80AB274022.1 Nicotiana tabacum WRAF2 mRNA for wound-responsive AP2 like factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SZ064e-35EF109_ARATH; Ethylene-responsive transcription factor ERF109
STRINGXP_009762423.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.19e-35redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]