PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00000g00441.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 340aa    MW: 38597.3 Da    PI: 4.8991
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00000g00441.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-17109158255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+WvAeIr p++   r+r +lg+f++aeeAa a++  + +l+g
  Peaxi162Scf00000g00441.1 109 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFDSAEEAAFAYDVEAFRLRG 158
                               8*******9.**********954...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.54E-34108168No hitNo description
SuperFamilySSF541712.94E-22109167IPR016177DNA-binding domain
PROSITE profilePS5103223.67109166IPR001471AP2/ERF domain
SMARTSM003801.1E-37109172IPR001471AP2/ERF domain
PfamPF008474.0E-11109158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-31109167IPR001471AP2/ERF domain
PRINTSPR003672.2E-10110121IPR001471AP2/ERF domain
PRINTSPR003672.2E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEYVESICKI QATMSIDRGI INPCNDPKQS ILTPSYSRFR FPFSLEDPPS TTNDNQSRMI  60
SFTPQNCFPG YDPAHHHAEV QCWSTSNETL TASSMMNLYG IVSSTTPKRY RGVRQRHWGK  120
WVAEIRLPRK RTRLWLGTFD SAEEAAFAYD VEAFRLRGTD ARLNFPHLFL GRNPSGNDID  180
ETSAESSTSF SKACSEVQHS KTHAHEFQFN RVEDKASSSV GQSVMFHERN YNDSKPDDTD  240
IRQASSDYQD SGDVILEGLF DSTSEKRWNS MDDVWINALR CSSWFPGSPL IGNYSISTDD  300
DYSQQQCDFT VDSGFVDDLL STKDDQIQHA NSTFSSKPLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20108166160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20108166463ATERF1
3gcc_A3e-20108166463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755242e-66HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018624032.15e-96PREDICTED: ethylene-responsive transcription factor ERF042-like
TrEMBLA0A314KWB73e-89A0A314KWB7_NICAT; Ethylene-responsive transcription factor erf053
STRINGPGSC0003DMT4000395763e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-32ERF family protein