PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_97411g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 211aa    MW: 23092.8 Da    PI: 5.2274
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_97411g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.32.1e-377104196
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                    +C aCk+lrrkC+k+Cv+apyf++e+  + +f ++hk+FGasn +k+l +lp ++r da+ s++yeAear++dPvyG+v++i++lqqq+++lk +l
  MA_97411g0010   7 PCGACKFLRRKCVKGCVYAPYFCSEEmgAPHFGAIHKVFGASNFSKMLMHLPIQQRYDAVVSVLYEAEARLQDPVYGCVSHINALQQQVANLKRKL 102
                    7***********************995569***************************************************************999 PP

         DUF260  95 al 96 
                    a+
  MA_97411g0010 103 AV 104
                    86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2816109IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-357103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGGGGAPCGA CKFLRRKCVK GCVYAPYFCS EEMGAPHFGA IHKVFGASNF SKMLMHLPIQ  60
QRYDAVVSVL YEAEARLQDP VYGCVSHINA LQQQVANLKR KLAVGYAQLA ACSNSDGASV  120
SLEYRYGMQS EMPSLTSNSN SSSPYDQQYL NPWGHPQLIR SDNVAIDSYI EEASEEEGSW  180
NNFSVCMQGG NHPLPTAQET NVFQDAETLS E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3931227126LOB family transfactor Ramosa2.1
5ly0_B6e-3931227126LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021814837.12e-51LOB domain-containing protein 29-like
SwissprotQ9M2J72e-48LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A498J1I91e-49A0A498J1I9_MALDO; Uncharacterized protein
STRINGXP_008235796.19e-51(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.17e-50lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Gupta A,Singh M,Laxmi A
    Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
    Plant Physiol., 2015. 168(1): p. 307-20
    [PMID:25810094]
  2. Porco S, et al.
    Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
    Development, 2016. 143(18): p. 3340-9
    [PMID:27578783]
  3. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  4. Xu C,Cao H,Xu E,Zhang S,Hu Y
    Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
    Plant Cell Physiol., 2018. 59(4): p. 744-755
    [PMID:29121271]
  5. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]