PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_93117g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 323aa    MW: 35836 Da    PI: 6.7362
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_93117g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.88.6e-3029106266
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 
                    +g+kdrhsk+ T++g+RdRR+Rls+++a +++dLqd+LG+ ++sk+++WL+++ak ai++l+ +              
  MA_93117g0010  29 TGGKDRHSKVLTSKGLRDRRIRLSVPTAFQLYDLQDRLGYEQPSKAVDWLIKAAKSAIDQLPVLdpemasssagnvaH 106
                    689************************************************************944443222222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3030170IPR005333Transcription factor, TCP
PROSITE profilePS5136930.0213189IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKGKAAAVEI QSGRKVEHEW RIVRASRLTG GKDRHSKVLT SKGLRDRRIR LSVPTAFQLY  60
DLQDRLGYEQ PSKAVDWLIK AAKSAIDQLP VLDPEMASSS AGNVAHLTSS ISTIVEHCVG  120
SPSVFSLPLE PQCNNDDSPC GIHTHIFSGT GNAQKLWDYN NMPSYTDMLS TQDSHPLQNM  180
PSPLTEALQK SFQPVTATPA SSQVVIESPC LQSNEMADSA KQSRDFGVNA EQDRANIPVM  240
IMKSAEQQQQ KQAYMHFRHY ASTFVPMFSN NANCLTSSPS SRGTPPSISS FITNIHKDSY  300
GEASANDFFQ FQEYDGREYQ EFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-213690155Putative transcription factor PCF6
5zkt_B2e-213690155Putative transcription factor PCF6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-33TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2