PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_92989g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 532aa    MW: 59898.1 Da    PI: 8.0519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_92989g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0580102123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C++C + F r  nL+ H r+H
  MA_92989g0010  80 YVCEICEQGFQRDQNLQMHRRRH 102
                    9*********************9 PP

2zf-C2H216.81.8e-05158180123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k +  +s++k H++t+
  MA_92989g0010 158 WTCEKCSKAYAVQSDYKAHLKTC 180
                    58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.7E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.49E-579102No hitNo description
PROSITE profilePS5015710.74180102IPR007087Zinc finger, C2H2
SMARTSM003550.01380102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355100122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4149179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.49E-5153178No hitNo description
SMARTSM0035548158185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAEISPEPGT PCSSANSARL HHGPSSPSQS ISQQSHNKSS LPPVSRGTNN KRTRRPAGTP  60
DPEAEVVSLS PKTLMESDRY VCEICEQGFQ RDQNLQMHRR RHKVPWKLLK RETTDARIKR  120
VFVCPEPTCL HHNPSHALGD LVGIKKHFRR KHSTSKQWTC EKCSKAYAVQ SDYKAHLKTC  180
GTRGHTCDCG RVFSRVESFI EHQDDCTATK EKIGDDDQLS MPCSFTRISS HNTFNAPETG  240
LFTSSVLRGI ECGSLEPNWP SMEQRQELQL MPSKQQGASE TSEFPEPYSK PSETSEFPEP  300
YSKPSETSEF PEPYSKAADD KSSPRLQLSI GLGSEITENK SEEETQQQKQ LMMRVAYDEM  360
AYAEHVRRVA KRQLELADIE FERAKKMREQ AHAELDKARF LKDKATREIA EATITPLEIT  420
CRSCHRHFHW PLQYQSPSLS GFLSSISNLQ AEGGADNENS QGKIFPAVSM MRKCAPSLLN  480
SPSSAPLPFH GFNNRSDKKY QSPITTAQLT KEKFPTNPSP RENAHLSDNL PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-18156211560Zinc finger protein JACKDAW
5b3h_F2e-18156211560Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0481639e-88FJ048163.2 Pinus taeda isolate 6077 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481649e-88FJ048164.2 Pinus taeda isolate 6080 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481659e-88FJ048165.2 Pinus taeda isolate 6087 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481669e-88FJ048166.2 Pinus taeda isolate 6091 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481679e-88FJ048167.2 Pinus taeda isolate 6075 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481689e-88FJ048168.2 Pinus taeda isolate 6088 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481699e-88FJ048169.2 Pinus taeda isolate 6085 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481709e-88FJ048170.2 Pinus taeda isolate 6089 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481719e-88FJ048171.2 Pinus taeda isolate 6074 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481729e-88FJ048172.2 Pinus taeda isolate 6086 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481739e-88FJ048173.2 Pinus taeda isolate 6076 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481749e-88FJ048174.2 Pinus taeda isolate 6081 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481759e-88FJ048175.2 Pinus taeda isolate 6079 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481769e-88FJ048176.2 Pinus taeda isolate 6090 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481779e-88FJ048177.2 Pinus taeda isolate 6078 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481789e-88FJ048178.2 Pinus taeda isolate 6082 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481799e-88FJ048179.2 Pinus taeda isolate 6083 anonymous locus 0_12050_01 genomic sequence.
GenBankFJ0481809e-88FJ048180.2 Pinus taeda isolate 6084 anonymous locus 0_12050_01 genomic sequence.
GenBankJQ2617669e-88JQ261766.1 Pinus radiata isolate 6092 hypothetical protein (0_12050_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849469.11e-131protein indeterminate-domain 16
SwissprotQ9C9X71e-118IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLW1PUR91e-130W1PUR9_AMBTC; Uncharacterized protein
STRINGERN110501e-131(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-120indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]