PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8854574g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 63aa    MW: 7059.19 Da    PI: 9.1454
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8854574g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26045.22.6e-14462154
           DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54
                     +C++C+vlr++C+++C l+p++      ++q++++ +++k++G++ +++l+++ p++ r
  MA_8854574g0010  4 SCNGCRVLRKGCSDSCELRPCLqwirtSESQANATVFLAKFYGRTGLMNLINSGPDHLR 62
                     6*********************9999888999*********************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.393363IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-10462IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MRVSCNGCRV LRKGCSDSCE LRPCLQWIRT SESQANATVF LAKFYGRTGL MNLINSGPDH  60
LRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838468.11e-35LOB domain-containing protein 40-like
SwissprotQ9ZW969e-35LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A0K9REJ12e-34A0A0K9REJ1_SPIOL; Uncharacterized protein
STRINGVIT_14s0006g02950.t011e-34(Vitis vinifera)
STRINGevm.model.supercontig_282.151e-34(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.14e-37LOB domain-containing protein 40