PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_88419g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 322aa    MW: 35570.2 Da    PI: 10.0603
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_88419g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31252309359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers ed +++++tYegeHnh+
  MA_88419g0010 252 DEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERSLEDASMLIVTYEGEHNHS 309
                    99***********************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.2E-20204248IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.6E-33238309IPR003657WRKY domain
PROSITE profilePS5081129.654245311IPR003657WRKY domain
SuperFamilySSF1182903.01E-26248309IPR003657WRKY domain
SMARTSM007742.4E-38250310IPR003657WRKY domain
PfamPF031066.4E-27252308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVSILSQKHH KHQQEQVQQD FGLAAEDALS KLNKVVSLLS RKGHARVRRG PLQTQSAAGS  60
GSEQLFMDGP NFLDLDSPNP HASASIYSSS SSDFALSQCV KQFLPCQSSS SGVLSADTNR  120
HQQLHPQMHY PQLQLQHLSP QADVMFRNGY MKLDNSMSCT PTLSSTKSFM SSLSMDGSIA  180
NDKQLLQYQS ISAAQERIPG VSSKRKCSGK GDDSSKCGST GRCHCSKRRK LRVKRTIRVP  240
AISSKLADIP PDEFSWRKYG QKPIKGSPHP RGYYKCSSMR GCPARKHVER SLEDASMLIV  300
TYEGEHNHSR LLSSNSSLIV HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22238308271WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1243240.0BT124324.1 Picea sitchensis clone WS0472_P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805954.13e-85PREDICTED: protein WRKY1-like isoform X1
SwissprotO043366e-72WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLD5ADG50.0D5ADG5_PICSI; Putative uncharacterized protein
STRINGVIT_14s0081g00560.t012e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.16e-50WRKY DNA-binding protein 74