PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8812600g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 240aa    MW: 27231.7 Da    PI: 9.2327
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8812600g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-33171092103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y+ ++d+++++++sw +++n+fvv+ ++ef+ +vLp+yF h+nf+SFvRQLn+YgF+k+ + +          eF+++ F+kg+++ll+
  MA_8812600g0010  17 FLVKTYRFVDDPSTDRIVSWGDHNNTFVVWRPKEFSASVLPRYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFSNELFRKGQQHLLS 101
                      9***************************************************************9988.........67*************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  MA_8812600g0010 102 RIRRRKSS 109
                      *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5113106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3215106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.3E-3615106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEEGCVTDAG RLVAAPFLVK TYRFVDDPST DRIVSWGDHN NTFVVWRPKE FSASVLPRYF  60
NHTNFSSFVR QLNTYGFRKI VRGRCEFSNE LFRKGQQHLL SRIRRRKSSS TSTAQASRMV  120
EYDESLSLIP NSSFTVQDSA VPAAECSLSE ENEILKRNNA LLLSEIDRLQ NICTGISRSL  180
FRTTPGISTE RLPGLTHLNR PKIGNAMDRK TDNLSRSSFM TDVAQENNVN PPELFGVPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-22910912123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0631452e-40FJ063145.2 Pinus taeda isolate 4925 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631462e-40FJ063146.2 Pinus taeda isolate 4926 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631472e-40FJ063147.2 Pinus taeda isolate 4920 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631482e-40FJ063148.2 Pinus taeda isolate 4933 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631492e-40FJ063149.2 Pinus taeda isolate 4922 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631502e-40FJ063150.2 Pinus taeda isolate 4924 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631512e-40FJ063151.2 Pinus taeda isolate 4930 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631522e-40FJ063152.2 Pinus taeda isolate 4929 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631532e-40FJ063153.2 Pinus taeda isolate 4936 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631542e-40FJ063154.2 Pinus taeda isolate 4927 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631552e-40FJ063155.2 Pinus taeda isolate 4923 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631562e-40FJ063156.2 Pinus taeda isolate 4934 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631572e-40FJ063157.2 Pinus taeda isolate 4921 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631582e-40FJ063158.2 Pinus taeda isolate 4932 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631592e-40FJ063159.2 Pinus taeda isolate 4931 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631602e-40FJ063160.2 Pinus taeda isolate 4919 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631612e-40FJ063161.2 Pinus taeda isolate 4928 anonymous locus 0_17776_01 genomic sequence.
GenBankFJ0631622e-40FJ063162.2 Pinus taeda isolate 4935 anonymous locus 0_17776_01 genomic sequence.
GenBankJQ2622522e-40JQ262252.1 Pinus radiata isolate 13630 hypothetical protein (0_17776_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C6357e-50HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WK882e-71H9WK88_PINTA; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr9P15370_0011e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-45heat shock transcription factor B4