PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_86300g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 218aa    MW: 23448.8 Da    PI: 6.8377
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_86300g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601278.7e-4071081101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+k+Cv+apyf +++ +++fa+vhk+FGasnv+kll ++p +er da+ +++yeA+ar+rdPvyG+v++i +lqqq+++l+a+la
  MA_86300g0010   7 PCGACKFLRRKCVKGCVFAPYFGSDEgAAQFAAVHKIFGASNVSKLLLHIPMSERCDAVVTIAYEAQARLRDPVYGCVAHIYALQQQVASLQADLA 102
                    7*********************998879******************************************************************** PP

         DUF260  96 llkeel 101
                     ++++l
  MA_86300g0010 103 FMQAQL 108
                    999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3296108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-387105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNGGGAPCGA CKFLRRKCVK GCVFAPYFGS DEGAAQFAAV HKIFGASNVS KLLLHIPMSE  60
RCDAVVTIAY EAQARLRDPV YGCVAHIYAL QQQVASLQAD LAFMQAQLAN RVSAGSAIAS  120
AICPVMSASS YSQHPHQVPA HLSMPYHLIP QPYNARVLGV KEENACGFAN SMDCEFSISP  180
NDNSSPQMEV LQRCRNLEKT GEDSEELEAL AQALLLRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3831087111LOB family transfactor Ramosa2.1
5ly0_B3e-3831087111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D31e-108D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S261_2V6.12e-57(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-57LOB domain-containing protein 20