PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8090186g0010
Common NameAP2L1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 547aa    MW: 60348.3 Da    PI: 7.8695
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8090186g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-17195244155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MA_8090186g0010 195 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 244
                      78*******************......55************************997 PP

2AP238.62.7e-12287337155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ + +g
  MA_8090186g0010 287 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDNEVEAARAYDKAAIRCNG 337
                      79********.7******5553..2.26**********99**********98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-16195253IPR016177DNA-binding domain
PfamPF008476.5E-9195244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-17196252IPR001471AP2/ERF domain
SMARTSM003808.5E-32196258IPR001471AP2/ERF domain
PROSITE profilePS5103217.794196252IPR001471AP2/ERF domain
CDDcd000181.56E-11196254No hitNo description
SuperFamilySSF541719.81E-16287346IPR016177DNA-binding domain
PfamPF008471.6E-7287337IPR001471AP2/ERF domain
CDDcd000183.20E-23287344No hitNo description
Gene3DG3DSA:3.30.730.106.6E-15288345IPR001471AP2/ERF domain
SMARTSM003805.6E-30288351IPR001471AP2/ERF domain
PROSITE profilePS5103214.552288345IPR001471AP2/ERF domain
PRINTSPR003672.3E-5289300IPR001471AP2/ERF domain
PRINTSPR003672.3E-5327347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MWDLNHIPEA SKEPQVVVPM EAACSAEGNL SVGNANFRDE NVSGSSSSSS VAIANTAMSV  60
DCEEHSMSRA CPSEQAEMNA RSSQENGNGL GSEAQVQTGK LFGFSFSNIV KGNCTEASNG  120
VSNGRSGCTN RVTRQFFPHG REFESQVMIP GRPQLPRAHW VGLTFRQAES FRSPTPKEAT  180
QPIKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI  240
KFRGVDADIN FNIDDYEDDV KQMSKLTKEE FVHVLRRQST GFPRGSSKFR GVTLHKCGRW  300
EARMGQFLGK KYVYLGLFDN EVEAARAYDK AAIRCNGKEA VTNFSPELYE SELALTEDKG  360
HDPDLDLSLG NSVPKDGSLV SKDNNDGPMR SESDLCTLSE PDWKTSCLIK PTVPNLLDGL  420
NQSAQGLSCE VPSLQRYQQS PSLSCEVPSL QRYQQSPGWV WQLPTNRPAA PHPPPMIESA  480
ASSGFSPQIY SSTTSPSPEW LQKRGFHFLF QPALMQTKNI LHSATAPALI NTYGKKPSDH  540
SLNLSLG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1189000.0BT118900.1 Picea glauca clone GQ04011_K11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509117.11e-124floral homeotic protein APETALA 2
TrEMBLQ9FV340.0Q9FV34_PICAB; APETALA2-related transcription factor 1
STRINGXP_004509117.11e-124(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-106AP2 family protein
Publications ? help Back to Top
  1. Vahala T,Oxelman B,von Arnold S
    Two APETALA2-like genes of Picea abies are differentially expressed during development.
    J. Exp. Bot., 2001. 52(358): p. 1111-5
    [PMID:11432927]