PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_63523g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 277aa    MW: 30317 Da    PI: 8.4883
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_63523g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-3119120197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l++ +     p++q++++ +v+k+FG++ ++ ++++++e er+d+++sl+yeA+ r+ +Pv+Gavg+++++++q++q++
  MA_63523g0010  19 SCNGCRVLRKGCSDNCILRQSLqwiesPQSQAHATVFVAKFFGRAGLMTFIATVSEPERPDLFKSLLYEACGRTVNPVHGAVGLMWTGKWQICQAA 114
                    6*********************************************************************************************** PP

         DUF260  92 aelall 97 
                    ++++l 
  MA_63523g0010 115 VQTVLS 120
                    998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.98518124IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-2619118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSATDKNITE RKEQQRKMSC NGCRVLRKGC SDNCILRQSL QWIESPQSQA HATVFVAKFF  60
GRAGLMTFIA TVSEPERPDL FKSLLYEACG RTVNPVHGAV GLMWTGKWQI CQAAVQTVLS  120
GGSLDRTPAS PWFPLTDANG DRNRMSAGDP WPNETDVGNY PGDDDVCKIY ELGACVDSRR  180
VRQKIDGSNN NNNEIASTDA DKLGQRGSGI DGQKNDIKLD LSLNCSSKSK SSNLKQQRVS  240
SPSTNSVHSE GSVNRLKISN PLPSSTMASQ QKFLDLL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2625192e-87JQ262519.1 Pinus radiata isolate 2166 hypothetical protein (2_2916_01) gene, 3' UTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QX506e-93A0A0D6QX50_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-61LOB domain-containing protein 38