PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_547683g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 334aa    MW: 36925.4 Da    PI: 7.4236
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_547683g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.88.4e-3029108279
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesss 79 
                     +g+kdrhsk+ T++g+RdRRvRls+++a +++ Lq++LG+ ++sk++eWL+++ak ai+el+ ++s+ as++  + ++  
  MA_547683g0010  29 TGGKDRHSKVLTSKGLRDRRVRLSVPTALQLYNLQERLGYEQPSKAVEWLIKAAKSAIDELPVLDSEMASASagNVAHLT 108
                     799*************************************************************7777755533111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-3030140IPR005333Transcription factor, TCP
PROSITE profilePS5136929.7963189IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKRKPAAIEI QSGRKVEQEW RIVRVSRPTG GKDRHSKVLT SKGLRDRRVR LSVPTALQLY  60
NLQERLGYEQ PSKAVEWLIK AAKSAIDELP VLDSEMASAS AGNVAHLTSS ISSIVEHCAG  120
SPSVFSLPLE PQSNNDDSPC GIHTHILSGT GNVQKLWDYN NMPSYTDMLS TQDSHPLQNM  180
PSPLTEALQK SFQPVTATLA SSRVFIESPC LQSNEMADSA KQSRDLGVNA EQGRANIPDM  240
IMKSGEQQQQ QQAHMHFMHY ASTFVPLFSN NANCLASSPS SRGTSPSISS SIANIHALSH  300
IYKDSYGEAS ANDFFPFQEY DGREYHELHK QKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-213690155Putative transcription factor PCF6
5zkt_B6e-213690155Putative transcription factor PCF6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-34TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2