PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_5374g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 336aa    MW: 37595.3 Da    PI: 7.7274
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_5374g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36261162101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++++isw+e g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F+kg+k+ll++i+
  MA_5374g0010  26 FLIKTYQLVDDSKTDDIISWNEAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFSNEYFRKGEKQLLSEIH 113
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
  MA_5374g0010 114 RRK 116
                   *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.65E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.7E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAHSAKQNND GTPVTVESHR SVPAPFLIKT YQLVDDSKTD DIISWNEAGT TFIVWRPAEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFSNEY FRKGEKQLLS EIHRRKGLIQ  120
PPPPPENRSI SPSNSGDEQT WSSTSSPNSP PAVEALSHKN AMEENEKLRK ENMLLVSELT  180
QMKKLHNQLL LFLSRHVNIT SADHVASFLS QSVGPSEGLS MLARLKDYLE QYGGEEISRD  240
FPGSSLSSGV SVVNDDPFVS SSAKEIMASK RPPFVDGACR EIGRKSYLSV KIEDDDEKGN  300
PKLFGVPLLP SKRSLPGSSD NGQPESMIRK IGRCAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-232111525129Heat shock factor protein 1
5d5v_B2e-232111525129Heat shock factor protein 1
5d5v_D2e-232111525129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127770.0BT112777.1 Picea glauca clone GQ03320_N17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278594.16e-78PREDICTED: heat stress transcription factor B-2b-like
SwissprotP223353e-70HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0D6R3L91e-167A0A0D6R3L9_ARACU; Uncharacterized protein
STRINGXP_010278594.12e-77(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-61heat shock transcription factor B4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]