PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3942g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bZIP
Protein Properties Length: 200aa    MW: 22839.4 Da    PI: 6.2799
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3942g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-0984135357
                   XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                   +l + ++   NReA r++R++Kka ++ Lee+v++L + N++L     +l+++va
  MA_3942g0010  84 SLAKKKKPFGNREAVRKYREKKKAHTAYLEEEVQKLRSLNQQLL---RRLQDQVA 135
                   6778889999*******************************999...55555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-982149IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.2E-1382149No hitNo description
PROSITE profilePS502178.78384150IPR004827Basic-leucine zipper domain
PfamPF077161.8E-1386131IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.04E-787133No hitNo description
CDDcd146861.86E-1194141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDNGELEFSD EVFPNSDHAT SFPMITSLDT ILDEVLKKNT HSCTHTHTCN PPGRDNTHTH  60
TCYHTHTQFL STEEEDQLGG TSESLAKKKK PFGNREAVRK YREKKKAHTA YLEEEVQKLR  120
SLNQQLLRRL QDQVALEAEV ERLRTVLFEF RGKIDSELGS FPYQKPCSGN VKEGDCSVQP  180
HNGDLNLRCE TDVPCLHPPF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0161141e-140JQ016114.1 Pinus taeda isolate 648 hypothetical protein (0_12104_01) gene, partial cds.
GenBankJQ0161241e-140JQ016124.1 Pinus taeda isolate 644 hypothetical protein (0_12104_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615170.11e-75PREDICTED: basic leucine zipper 24-like isoform X2
RefseqXP_017615171.11e-75PREDICTED: basic leucine zipper 24-like isoform X2
SwissprotQ8VY763e-63BZP19_ARATH; Basic leucine zipper 19
TrEMBLA0A2P5RAH74e-74A0A2P5RAH7_GOSBA; Uncharacterized protein
STRINGGorai.012G081200.15e-74(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19701536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.16e-35bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Henriques AR,Farias DDR,Costa de Oliveira A
    Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.
    Genet. Mol. Res., 2017.
    [PMID:28671251]
  4. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]