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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_3891g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TCP | ||||||||
Protein Properties | Length: 545aa MW: 59939.9 Da PI: 8.9535 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114 | 2.1e-35 | 101 | 279 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceae 76 g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+LG+d++s +++WL+++ak ai+elt + + MA_3891g0010 101 GGKDRHSKVLTAKGLRDRRVRLSVPTAIQLYDLQDRLGLDQPSMAVDWLIKAAKSAIDELTVLdtemasasvgntvqltssdcstvE---------- 187 68*************************************************************444444444444333333222220.......... PP TCP 77 sssssasnsssg..............................................kaaksaakskksqksaasalnlak.esrakarararert 126 + ++++s+ s k +++++s+ +++k sr++ar +arer MA_3891g0010 188 -----------HcvgspretaasalssftvgqgttshkstngriisittlkesdlgrsSSSTSD-GSIKGSAEHTSNCSMSKpVSRKEARLKARERA 272 ...........13333444444555555566666666677788999999999999974333333.44455555555577777799999999999999 PP TCP 127 rekmrik 133 r+k + MA_3891g0010 273 RKKSSSA 279 9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.337 | 102 | 160 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.8E-34 | 102 | 278 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MLRNSFKDLE IGLLRVKNRE TEAEVHSKDL AAFSESINKS PLQEDSADGR SKHDTYKRQD 60 NGKGSKRKVG EMERKAASVE AQSGKKIEQD WRIVRVSQLI GGKDRHSKVL TAKGLRDRRV 120 RLSVPTAIQL YDLQDRLGLD QPSMAVDWLI KAAKSAIDEL TVLDTEMASA SVGNTVQLTS 180 SDCSTVEHCV GSPRETAASA LSSFTVGQGT TSHKSTNGRI ISITTLKESD LGRSSSSTSD 240 GSIKGSAEHT SNCSMSKPVS RKEARLKARE RARKKSSSAK NSGGSPPAIH ELKSMQPSLT 300 SLFKNVSPYT TLPLEPQCRK DDNPCGIHAQ VLSETGCAQQ MLDYNNTPSY TDMLCTQDSH 360 PLQNMASSWT AALQKSFQPV PSTLASMQAV IGSSLPQSYE MVDSAFPLFH PKQSRHLESN 420 TAEGQGNHFF PNMTMKSVEQ EQQASQINIK HFASTIVPTF SNYINFSTSS LSSKEHLQAN 480 SSSATNMPSF SHTPKNAYGE ASAKAAHDFV HLQDYDARIF QESHTLQHNV NHEHNHLWAK 540 QKQYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 107 | 160 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 107 | 160 | 1 | 54 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
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Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 9e-33 | plastid transcription factor 1 |