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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_33594g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | G2-like | ||||||||
Protein Properties | Length: 468aa MW: 51128.4 Da PI: 6.8973 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.6 | 1.2e-32 | 232 | 287 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ MA_33594g0010 232 KARRCWSPELHRRFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 287 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 229 | 290 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.977 | 229 | 289 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-18 | 230 | 290 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-27 | 232 | 287 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 234 | 285 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MHLLNDAIAA SKEQLTDCQP SVQAPRPVQQ AGFQFEEEQY NRPVLEELIP IKKRCDESGD 60 ESPENNQNDS KRTKFANECK KEKSSSPEEP LKQHDSQLRS DQEQLFPTNS SLFSDSKQRI 120 GGAFLPFSRE RQSNPSVSAR SNAVKHPPDL ALSSAEQEVG STFRCNETAT MNNVTTMNNV 180 TTTSLSRSKE PTETTVPTPQ KEVVVKPNGG VCAVPTPAAS NATQSGGQSQ RKARRCWSPE 240 LHRRFVNALQ QLGGSQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPSPPTPAS 300 QAPQLVVLGG IWVPPEYAAH AAVAAHQGPG LYGTLSNTTS SHSQSHYCQS PMPQEHYSQM 360 NMSSQLQLPQ PAYCEQQQTP SQSLSSPQGP LQLTGQSSGA RGTSVDGGRE ESVGEDGKSE 420 SSSWKGEEIA KNVEARNMGR GLSLRKQPLQ SVDGDEEDSR GSETTLKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-14 | 232 | 285 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 232 | 285 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 232 | 285 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 232 | 285 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113513 | 0.0 | BT113513.1 Picea glauca clone GQ03411_M24 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A171NYB9 | 0.0 | A0A171NYB9_TAXWC; GARP2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4303 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-44 | G2-like family protein |