PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_223267g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 305aa    MW: 33690.1 Da    PI: 8.2537
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_223267g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26081.31.6e-2537131493
          DUF260   4 aCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                     +C+vlr++C+++C+l+ ++     +++q++++ +++k++G+s +++l+++ pe+ r+++++sl+yeA+ r+ +PvyG++g+++++++  +q+ ++
  MA_223267g0010  37 GCRVLRKGCSESCILRSCLhwistAEAQANATIFLAKFYGRSGLMNLIRNGPEHLRPAIFRSLLYEACGRMVNPVYGSLGLVWSGNWAECQAGVD 131
                     8******************9999777889**********************************************************99998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.16933139IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-2037128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
CKILCAQRLN TRYNEDELQW LPSPAKGLQR ILHSQDGCRV LRKGCSESCI LRSCLHWIST  60
AEAQANATIF LAKFYGRSGL MNLIRNGPEH LRPAIFRSLL YEACGRMVNP VYGSLGLVWS  120
GNWAECQAGV DSILRGSECQ AGVDSILRGS FRAVPQGNFI SPDCKSIVPT EATAVHELRR  180
SAKARSRLKG VPHAKRKRRE GERVTNSNPI HFSGISDDRG DVTNAVQDAA DNIKFNEERT  240
DKYSMIFSEQ EHDEFVAAGQ AQMEYCHDMC NFKTGKPETA CNPVGLELTL GSRGSNSPAD  300
KLSAV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-56LOB domain-containing protein 40