PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_16752g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 274aa    MW: 28908 Da    PI: 9.1189
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_16752g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.67.3e-41105220289
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                    ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai+++tgt++++a+ +  ++s +ss+s+ s++        
  MA_16752g0010 105 PAKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQHAEPAIIAATGTGTIPANYStLNVSLRSSNSSISAShhtkalpl 200
                    6899*****************************************************************777655555555552222222233333 PP

            TCP  89 ...................k 89 
                                       +
  MA_16752g0010 201 afhgtlglgpnvdmgarldH 220
                    33333333333333222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-39110217IPR005333Transcription factor, TCP
PROSITE profilePS5136928.07111165IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MESGGGGDHG RPPLKLSSSS QEPTMASTSA SASAYEGRGG LVGSYVPTSS TSRVDSHMNI  60
ASTQPVDASL AMSMSSATTS NNETPISTSQ QQQETVALDP NKKAPAKRSS TKDRHTKVDG  120
RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQHAEP AIIAATGTGT IPANYSTLNV  180
SLRSSNSSIS ASHHTKALPL AFHGTLGLGP NVDMGARLDH QLRARNEWER AENRTSMELA  240
VAANRQSEDR RLQIGGGGGE MGHGGGGDHM LGFH
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071008.12e-52transcription factor TCP15
RefseqXP_021890638.12e-52transcription factor TCP15
RefseqXP_021901654.18e-52transcription factor TCP8-like
SwissprotQ9C5186e-47TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A0D6R1481e-105A0A0D6R148_ARACU; Uncharacterized protein
STRINGevm.model.supercontig_128.68e-52(Carica papaya)
STRINGevm.model.supercontig_30.483e-51(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.15e-43TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]