PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_16704g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 346aa    MW: 37923.9 Da    PI: 8.1682
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_16704g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.42.8e-26462354131
            TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa..sec.eaessss 80 
                     +d+h  + T+ g+Rd R+ ls+ +a  f+ +qd+LGfd++s+++eWL+++a+ ai el++                 +   a  s+c ++++ +s
  MA_16704g0010  46 SQDQHTMVLTSNGPRDQRMELSVRTAVMFYFVQDMLGFDQPSEAVEWLIEKAEDAIRELPQPasistshrsqyvdsniT---AvaSSCvQTGDLNS 138
                    67999*********************************************************88877766666664431...24456664444444 PP

            TCP  81 sasnsssg..............................................kaaksaakskksqksaasalnlakesrakarararertrekm 130
                    s+++++ +                                              ++ +     ++++++++ +  + ke +akar++ r+rt+ k 
  MA_16704g0010 139 SSQENTFSdsedrrgnrhdeilaartsigqklstakttesnsidsighgerreqRSVAMRSVASNRRTRETVNAVPPKEFKAKAREKCRQRTKPKD 234
                    444222224456677777888889888889999999999766666666666654222222222333333333455556677***********9987 PP

            TCP 131 r 131
                    +
  MA_16704g0010 235 K 235
                    6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2545235IPR005333Transcription factor, TCP
PROSITE profilePS5136921.3146104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGEEAFNFSK EMAANIPGER RVHKGFRVRR SARDFDASGI SPCSGSQDQH TMVLTSNGPR  60
DQRMELSVRT AVMFYFVQDM LGFDQPSEAV EWLIEKAEDA IRELPQPASI STSHRSQYVD  120
SNITAVASSC VQTGDLNSSS QENTFSDSED RRGNRHDEIL AARTSIGQKL STAKTTESNS  180
IDSIGHGERR EQRSVAMRSV ASNRRTRETV NAVPPKEFKA KAREKCRQRT KPKDKSYSQQ  240
IGISGISQKS SVCPHCPTFC LQENTTPPPT MMNETTDANS SSNAFLHGLV LPDDSTLCNH  300
SRRCITSAPA EIQCSSHASV HYSAAKQGGS STQSTGTFSK SLSSNT
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-23TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2