PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_15254g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 555aa    MW: 60578.5 Da    PI: 9.2844
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_15254g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP88.91.2e-271002892133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 
                    +g+kdrhsk+ T++g+RdRRvRls ++a++++dLqd+L + ++s +++WL+++ak ai elt +                                
  MA_15254g0010 100 TGGKDRHSKVRTAKGLRDRRVRLSGPTAIQLYDLQDRLCLEQPSMAVDWLIKAAKSAIYELTVQdaemasasagnlaltssncssveycvgspres 195
                    689*************************************************************77766666666665555544444444444444 PP

            TCP  66 ...ssssaseceaesssssasnsssg...........................................kaaksaa.kskksqksaasalnlakes 114
                                             +                                           ++++s+   + ++++ +++  ++ + s
  MA_15254g0010 196 ataA---------------------AasgltafrvglsspkaqgtdshnaisgkaisttnlkesdlarsSSSTSDGsIKGSAEHTSNCSMSKPAAS 270
                    3330.....................03334444444555555555555566667777777888888887555555557778888888888888899 PP

            TCP 115 rakarararertrekmrik 133
                    r +ar +arer r k +  
  MA_15254g0010 271 RREARLKARERARRKSASA 289
                    9999999999999987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-31101286IPR005333Transcription factor, TCP
PROSITE profilePS5136927.776102160IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MLSNSLEDLQ AGFMGVNNKE PEVEIYSKDQ AAFSESINGN RLSEEYTNGR RKHYNNKLQD  60
NGKGSKRKAG EMERKARVIE IQPRNKVEQD SRIVRLSRLT GGKDRHSKVR TAKGLRDRRV  120
RLSGPTAIQL YDLQDRLCLE QPSMAVDWLI KAAKSAIYEL TVQDAEMASA SAGNLALTSS  180
NCSSVEYCVG SPRESATAAA ASGLTAFRVG LSSPKAQGTD SHNAISGKAI STTNLKESDL  240
ARSSSSTSDG SIKGSAEHTS NCSMSKPAAS RREARLKARE RARRKSASAQ NSVGSPPAIQ  300
QLNSMKPSLT SLLKSSFLYP TLALESHCSK DDNPCGTHTQ VLSGIDSVQQ LWGYNNMPSY  360
TDMLCTQDSH PLQNMPSYST SALQKSLPPA PSTSASIQAV MESSYIQSYE MADSAIPFFY  420
PKQVLHLGGN GAQGQANLYY SSPPNTIMKR VEQQPQTLIR HFCSTSVPTL SNDIHLLTSS  480
LSGRGPLQSN SSSITNMPSL SHAQNHAYRE ASAKAAHDFG SLRDDDDRAF QEYQNAQDNV  540
KYGHNQLWAK QKEHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-15107160154Putative transcription factor PCF6
5zkt_B5e-15107160154Putative transcription factor PCF6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-28plastid transcription factor 1