PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_130948g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 706aa    MW: 77247.8 Da    PI: 6.622
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_130948g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17252301155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MA_130948g0020 252 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 301
                     78*******************......55************************998 PP

2AP241.24.1e-13344394155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  MA_130948g0020 344 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEIEAARAYDQAAIKCNG 394
                     89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-16252310IPR016177DNA-binding domain
PfamPF008476.0E-9252301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17253310IPR001471AP2/ERF domain
SMARTSM003807.2E-33253315IPR001471AP2/ERF domain
CDDcd000182.63E-11253311No hitNo description
PROSITE profilePS5103217.873253309IPR001471AP2/ERF domain
CDDcd000184.97E-24344404No hitNo description
PfamPF008471.4E-8344394IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-16344404IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-15345402IPR001471AP2/ERF domain
SMARTSM003801.0E-30345408IPR001471AP2/ERF domain
PROSITE profilePS5103215.079345402IPR001471AP2/ERF domain
PRINTSPR003671.2E-5346357IPR001471AP2/ERF domain
PRINTSPR003671.2E-5384404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSTCEAPAEI STEWDLNLTP AVPDEYVLAV NCTNPNFLRE PHEVNALSSK AEESGSVCDE  60
TSINPAITVA KSELEPWTSG TGELSFIRRA ENCRDDSGTS NSSVVNAPVI DNRIKNDGSL  120
YLECEDSANQ AIESPSRSND INNLGQSKTV SSKLFGCLMT VNALAGSEMN THSQGQPDTC  180
ITHQFSVVNR ALDSVSSPPL EEIRGPVNQF SRSLWGDHLV SSQTDSSGTP NPPTVPIQAV  240
KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR  300
GQDADINFNL SDYEEDLKQL NNLTKEEFVH ILRRQSNGFS RGSSKYRGVT LHKCGRWEAR  360
MGQFLGKKYI YLGLFDNEIE AARAYDQAAI KCNGREAVTN FDPSVYQNKL LTEGNSSSFD  420
QNLDLSLGIS APTVLDTSVS GDNKIGGLKV KTSTDIVVEP DWKKARCAIS TPEDGSQQTQ  480
LEAPFPYGQL GQYVGLQNRE TFFSQGKQTP FTFLPQYQIH QPNSEKIQVK GNLTYNPLRL  540
LPNPKDDSIH LALEQQGLWS RVCPLSFPNY KLYSPTGGLQ GQGGSGLSPL LSSSIEHQPG  600
WPWKCYTNGS SASMLAAASS GFSPQAQTTL AHPSDWMHKL QGFQYPSGQS MGTQLSAPKP  660
SSQRQNLHST DASSSGQVLG LSLSISTKSI AEPCSSKDND GSKFLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6767300.0EF676730.1 Picea sitchensis clone WS0274_I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLT50.0B8LLT5_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-95AP2 family protein