PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12808g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 477aa    MW: 52768 Da    PI: 4.3389
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12808g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95e-36161072102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+ +++++sws+ +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i
  MA_12808g0010  16 FLTKTYDMVDDPVTDSIVSWSSGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNI 102
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                     r+k 
  MA_12808g0010 103 YRRKP 107
                    **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-406100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.07E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6312105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDGSQTSSTN NAPPPFLTKT YDMVDDPVTD SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK NIYRRKPTHS HTQPQQQQGQ  120
SSSVGACVET VSQRLQGMEQ RQQQMMSFLA KAMQNPGFLA QLVQQNENNM RIAATNKKRR  180
LPKQEENSQD GQHGPPDGQI VKYQPALSDA TKAFFMQIFN TETSNKLEPS PNGLDNFSDV  240
GRSSSEAIDN GNGSSMGRQS GVTLTEMQGT SGFSDACVTS EISDIQVSST LSEMHCSAEL  300
PEIVASSGFP EMVVSSGLAD MHSFSNLAES IVTGTNLHTS QFELPELQST VTVNHNGSLP  360
SEDYMQPKIL RQDANSEPIA MEMGLAIDGD RFSSEGDGDI LLDGEDLMPE INDVFWEQFL  420
AESATSGGTE EAESAVQESF TKDQDEKSSE NGNWWNKKQN MDNLTEQMGQ LASESNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-271410518120Heat shock factor protein 1
5d5u_B4e-271410527129Heat shock factor protein 1
5d5v_B4e-271410527129Heat shock factor protein 1
5d5v_D4e-271410527129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131750.0BT113175.1 Picea glauca clone GQ03326_L15 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854048.21e-164heat stress transcription factor A-1 isoform X1
SwissprotQ84T611e-126HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLU5CZX61e-163U5CZX6_AMBTC; Uncharacterized protein
STRINGERN155151e-164(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.29e-82heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]