PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12784g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 329aa    MW: 36191.4 Da    PI: 6.995
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12784g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.43.8e-2829109280
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 
                    +g+kdrhsk+ T++g+RdRRvRls+++a +++dLq +LG+ ++sk+++WL++ ak ai++l+ ++s+ as++  + ++  s
  MA_12784g0010  29 TGGKDRHSKVLTSKGLRDRRVRLSVPTAFQLYDLQARLGYEQPSKAVDWLIKVAKSAIDDLPVLDSEMASASagNVAHLTS 109
                    799*************************************************************66666555321111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-2830182IPR005333Transcription factor, TCP
PROSITE profilePS5136928.4963189IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKRKPAAAEI QSGRKVEKEW QIVRVSRQTG GKDRHSKVLT SKGLRDRRVR LSVPTAFQLY  60
DLQARLGYEQ PSKAVDWLIK VAKSAIDDLP VLDSEMASAS AGNVAHLTSS ISSIVEHCVG  120
SPSVFSLPLE PQSNNDDSPC GIHTHILSGT GNVQKLWNYN NMPSYTDILS TQDSYPLQNM  180
PSPLTEALQK SFQPVSATPA SSQVVIESPC LQSNEMADSA KQSRHSAVNG EQGRANIPDM  240
IMKSAEQQQQ QQAHMHFRHY ASTFVPMFSN NANCLASSSS SRGTPPSISS SITNIHALSH  300
IHKDSYAEVF ANDFFPFQEC DGGEYQEFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-203690155Putative transcription factor PCF6
5zkt_B3e-203690155Putative transcription factor PCF6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-32TCP family protein