PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_122595g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 362aa    MW: 39663.8 Da    PI: 8.2215
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_122595g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.31.1e-3231132197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++ +++a+p+++r+++++sl+yeA+ r+ +Pv+Gavg+++++++ql+q+
  MA_122595g0010  31 SCNGCRVLRKGCSDTCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMAFISAVPDHQRPALFQSLLYEACGRTVNPVNGAVGLLWSGNWQLCQA 125
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l 
  MA_122595g0010 126 AVETVLK 132
                     *998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.68430136IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-2731130IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTATTGTGSS GRDLSVFIQR KQEADGRKRM SCNGCRVLRK GCSDTCILRP CLQWIESPEA  60
QGHATVFVAK FFGRAGLMAF ISAVPDHQRP ALFQSLLYEA CGRTVNPVNG AVGLLWSGNW  120
QLCQAAVETV LKGGTLRPPQ SSSVIPTCST RPSLMNSLSA NFRVNSNVNN INSGSRPSLE  180
VGKARPVNEM REMYTVKPEV DFPLNRLQES CNPHQPWAAK VKSEPHDLSL CEAFEAVRHN  240
QTIIHLPPSE IAAPPRRVRQ RIEGINEVNY QDLSNSNSDD VKCLGDFDFH PSTGMELKAN  300
LDLTLNFEAS SSSHFKRRVS SPSIVSVNSE GSVTSLESGS LRVPNEKDSS AAKEHKVLDL  360
FP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1194650.0BT119465.1 Picea glauca clone GQ04106_A22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3G6JFC70.0A0A3G6JFC7_PINTA; ASYMMETRIC LEAVES 2-like protein 39
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-69LOB domain-containing protein 37